From Material Fundamentals to Process-Driven Cleaning Strategies
Although both silicon and glass wafers share the common goal of being “cleaned,” the challenges and failure modes they face are fundamentally different. These differences arise from:
-
The intrinsic material properties of silicon and glass
-
Their distinct specification requirements
-
The very different “philosophies” of cleaning driven by their end applications
Before comparing processes, we need to ask: What exactly are we cleaning, and what contaminants are involved?
What Are We Cleaning? Four Major Categories of Contaminants
Contaminants on wafer surfaces can be broadly divided into four categories:
1. Particle Contaminants
Examples: dust, metal particles, organic particulates, abrasive particles from CMP, etc.
Impact:
2. Organic Contaminants
Examples: photoresist residues, resin additives, skin oils, solvent residues, etc.
Impact:
3. Metal Ion Contaminants
Examples: Fe, Cu, Na, K, Ca, etc., originating mainly from equipment, chemicals, and human contact.
Impact:
-
In semiconductors: metal ions are “killer” contaminants. They introduce energy levels in the bandgap, increasing leakage current, shortening carrier lifetime, and severely degrading electrical performance.
-
On glass: they can impair thin-film quality and adhesion.
4. Native Oxide or Surface-Modified Layer
-
Silicon wafers:
A thin silicon dioxide (SiO₂) layer (native oxide) naturally forms in air. Its thickness and uniformity are difficult to control, and it must be completely removed when fabricating critical structures such as gate oxides.
-
Glass wafers:
Glass is itself a silica network, so there is no separate “native oxide layer” to strip. However, the surface can be modified or contaminated, forming a layer that still needs to be removed or refreshed.

I. Core Goals: Electrical Performance vs. Physical Perfection
Silicon Wafers
The primary goal of cleaning is to ensure electrical performance.
Typical specifications include:
-
Extremely low particle counts and sizes (e.g., effective removal of particles ≥ 0.1 μm)
-
Ultra-low metal ion concentrations (e.g., Fe, Cu ≤ 10¹⁰ atoms/cm² or below)
-
Very low organic residue levels
Even trace contamination can lead to:
-
Circuit shorts or open circuits
-
Increased leakage currents
-
Gate oxide integrity failures
Glass Wafers
As substrates, glass wafers focus on physical integrity and chemical stability.
Key specifications emphasize:
-
No scratches or non-removable stains
-
Preservation of the original surface roughness and geometry
-
Visual cleanliness and stable surfaces for subsequent processes (e.g., coating, thin-film deposition)
In other words, silicon cleaning is performance-driven, while glass cleaning is appearance- and integrity-driven—unless glass is pushed into semiconductor-grade use.
II. Material Nature: Crystalline vs. Amorphous
Silicon
Glass
Consequence:
-
Silicon wafer cleaning can tolerate controlled, light etching to remove contaminants and native oxide.
-
Glass wafer cleaning must be much gentler, minimizing attack on the substrate itself.
III. Process Philosophy: How Cleaning Strategies Diverge
High-Level Comparison
| Cleaning Item |
Silicon Wafer Cleaning |
Glass Wafer Cleaning |
| Cleaning goal |
Includes removal of the native oxide layer and all performance-critical contaminants |
Selective removal: remove contaminants while preserving the glass substrate and its surface morphology |
| Standard approach |
RCA-type cleans with strong acids/alkalis and oxidizers |
Weak-alkaline, glass-safe cleaners with carefully controlled conditions |
| Key chemicals |
Strong acids, strong alkalis, oxidizing solutions (SPM, SC1, DHF, SC2) |
Weak-alkaline cleaning agents, specialized neutral or mildly acidic formulations |
| Physical assistance |
Megasonic cleaning; high-purity DI water rinsing |
Ultrasonic or megasonic cleaning, with gentle handling |
| Drying technology |
Marangoni / IPA vapor drying |
Slow lift-out, IPA vapor drying, and other low-stress drying methods |
IV. Comparison of Typical Cleaning Solutions
Silicon Wafer Cleaning
Cleaning objective:
Thorough removal of:
Typical process: Standard RCA Clean
-
SPM (H₂SO₄/H₂O₂)
Removes heavy organics and photoresist residues via strong oxidation.
-
SC1 (NH₄OH/H₂O₂/H₂O)
Alkaline solution that removes particles through a combination of lift-off, micro-etching, and electrostatic effects.
-
DHF (dilute HF)
Removes native oxide and certain metal contaminants.
-
SC2 (HCl/H₂O₂/H₂O)
Removes metal ions via complexation and oxidation.
Key chemicals:
-
Strong acids (H₂SO₄, HCl)
-
Strong oxidizers (H₂O₂, ozone)
-
Alkaline solutions (NH₄OH, etc.)
Physical assistance and drying:
-
Megasonic cleaning for efficient, gentle particle removal
-
High-purity DI water rinsing
-
Marangoni / IPA vapor drying to minimize watermark formation

Glass Wafer Cleaning
Cleaning objective:
Selective removal of contaminants while protecting the glass substrate and maintaining:
Characteristic cleaning flow:
-
Mild-alkaline cleaner with surfactants
-
Acidic or neutral cleaner (if required)
-
HF is strictly avoided throughout the process to prevent substrate damage.
Key chemicals:
Physical assistance and drying:
-
Ultrasonic and/or megasonic cleaning
-
Multiple pure-water rinses
-
Gentle drying (slow lift-out, IPA vapor drying, etc.)
V. Glass Wafer Cleaning in Practice
In most glass processing plants today, cleaning processes are designed around the fragility and chemistry of glass and therefore rely heavily on specialized weak-alkaline cleaners.
Cleaning Agent Characteristics
Process Flow
-
Clean in a weak-alkaline bath (controlled concentration)
-
Operate from room temperature up to ~60 °C
-
Use ultrasonic agitation to enhance contaminant removal
-
Perform multiple pure-water rinses
-
Apply gentle drying (e.g., slow lifting from the bath, IPA vapor drying)
This flow reliably meets the visual cleanliness and general surface cleanliness requirements for standard glass wafer applications.
VI. Silicon Wafer Cleaning in Semiconductor Processing
For semiconductor manufacturing, silicon wafers typically use standard RCA cleaning as the backbone process.
-
Capable of addressing all four contaminant types systematically
-
Delivers the ultra-low particle, organic, and metal ion levels required for advanced device performance
-
Compatible with integration into complex process flows (gate stack formation, high-k/metal gate, etc.)
VII. When Glass Must Meet Semiconductor-Level Cleanliness
As glass wafers move into high-end applications—for example:
—the traditional weak-alkaline cleaning approach may no longer be sufficient. In such cases, semiconductor cleaning concepts are adapted to glass, leading to a modified RCA-type strategy.
Core Strategy: Diluted and Optimized RCA for Glass
-
Organic removal
Use SPM or milder oxidizing solutions such as ozone-containing water to decompose organic contaminants.
-
Particle removal
Employ highly diluted SC1 at lower temperatures and shorter treatment times, leveraging:
-
Metal ion removal
Use diluted SC2 or simpler dilute HCl/HNO₃ formulations to chelate and remove metal ions.
-
Strict prohibition of HF/DHF
HF-based steps must be absolutely avoided to prevent glass corrosion and surface roughening.
Throughout this modified process, the use of megasonic technology:
Conclusion
The cleaning processes for silicon and glass wafers are essentially reverse-engineered from their end-use requirements, material properties, and physicochemical behavior.
-
Silicon wafer cleaning pursues “atomic-level cleanliness” in support of electrical performance.
-
Glass wafer cleaning prioritizes “perfect, undamaged surfaces” with stable physical and optical properties.
As glass wafers are increasingly incorporated into semiconductor and advanced packaging applications, their cleaning requirements will inevitably tighten. Traditional weak-alkaline glass cleaning will evolve toward more refined, customized solutions, such as modified RCA-based processes, to achieve higher levels of cleanliness without sacrificing the integrity of the glass substrate.